MarkerMap: nonlinear marker selection for single-cell studies - npj Systems Biology and Applications
www.nature.com/articles/s41540-024-00339-3?fromPaywallRec=false
Sep 25, 2024
1
A scalable SCENIC workflow for single-cell gene regulatory network analysis - Nature Protocols
www.nature.com/articles/s41596-020-0336-2
Sep 25, 2024
1
Tiered sympathetic control of cardiac function revealed by viral tracing and single cell transcriptome profiling
elifesciences.org/articles/86295
Sep 25, 2024
1
Opto-seq reveals input-specific immediate-early gene induction in ventral tegmental area cell types
www.sciencedirect.com/science/article/pii/S0896627324003738?via%3Dihub
Sep 24, 2024
2
UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics
www.biorxiv.org/content/10.1101/2024.07.08.601384v1.full
Sep 19, 2024
1
Single-cell and spatial atlases of spinal cord injury in the Tabulae Paralytica - Nature
www.nature.com/articles/s41586-024-07504-y
Sep 19, 2024
1
Estrogen-sensitive medial preoptic area neurons coordinate torpor in mice - Nature Communications
www.nature.com/articles/s41467-020-20050-1
Sep 8, 2024
Why prefer the golden Syrian hamster (Mesocricetus auratus) to the Wistar rat in experimental studies on plasma lipoprotein metabolism?
www.sciencedirect.com/science/article/pii/0305049194900582
Aug 16, 2024
1
A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality
www.sciencedirect.com/science/article/pii/S0092867418308031
Aug 15, 2024
1
c-fos induction in the choroid plexus, tanycytes and pars tuberalis is an early indicator of spontaneous arousal from torpor in a deep hibernator
www.biorxiv.org/content/10.1101/2023.12.19.572338v2
Aug 7, 2024
1
Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes
www.sciencedirect.com/science/article/pii/S0896627320309697?via%3Dihub
Jul 31, 2024
1
ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists - Nature Communications
www.nature.com/articles/s41467-024-48188-2
Jul 24, 2024
1
Library size normalization affects spatial domain identification - Nature Genetics
www.nature.com/articles/s41588-024-01815-6
Jul 24, 2024
1
Multiscale topology classifies cells in subcellular spatial transcriptomics - Nature
www.nature.com/articles/s41586-024-07563-1
Jul 24, 2024
1
scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis - Genome Biology
genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03299-3
Jul 24, 2024
1
Visual analysis of spatial transcriptomics data with RedeViz
www.biorxiv.org/content/10.1101/2024.07.09.602652v1.full
Jul 24, 2024
1
Visual analysis of spatial transcriptomics data with RedeViz
www.biorxiv.org/content/10.1101/2024.07.09.602652v1
Jul 24, 2024
1
UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics
www.biorxiv.org/content/10.1101/2024.07.08.601384v1
Jul 24, 2024
1
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Single-Cell, Single-Nucleus and Xenium-Based Spatial Transcriptomics Analyses Reveal Inflammatory Activation and Altered Cell Interactions in the Hippocampus in Mice with Temporal Lobe Epilepsy.
www.researchsquare.com/article/rs-4590465/v1
Jul 24, 2024
1
A Hypothalamic Circuit that Modulates Feeding and Parenting Behaviors
www.biorxiv.org/content/10.1101/2024.07.22.604437v1
Jul 24, 2024
1
A scalable platform for the development of cell-type-specific viral drivers
elifesciences.org/articles/48089
Jul 18, 2024
A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA - Scientific Reports
www.nature.com/articles/s41598-017-04426-w
Jul 2, 2024
1
【R】トランスクリプトーム解析のためのGO解析まとめ
shiokoji11235.com/go-analysis-for-transcriptome-analysis
Jul 1, 2024
1
Do descending influences alternate to produce episodic breathing?
www.sciencedirect.com/science/article/abs/pii/S0034568797000960?via%3Dihub
Jun 25, 2024
Autonomic control of circulation during the hibernating cycle in ground squirrels
physoc.onlinelibrary.wiley.com/doi/epdf/10.1113/jphysiol.1963.sp007204
Jun 25, 2024
Peripheral ghrelin stimulates feeding behavior and positive energy balance in a sciurid hibernator
www.sciencedirect.com/science/article/pii/S0018506X11000286?via%3Dihub
Jun 25, 2024
To eat or not to eat: the effect of AICAR on food intake regulation in yellow-bellied marmots (Marmota flaviventris)
journals.biologists.com/jeb/article/213/12/2031/9901/To-eat-or-not-to-eat-the-effect-of-AICAR-on-food
Jun 25, 2024
11
Towards understanding the neural origins of hibernation
journals.biologists.com/jeb/article/225/1/jeb229542/273864/Towards-understanding-the-neural-origins-of
Jun 25, 2024
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Thermoregulatory inversion: a novel thermoregulatory paradigm | American Journal of Physiology-Regulatory, Integrative and Comparative Physiology
journals.physiology.org/doi/full/10.1152/ajpregu.00022.2017
Jun 25, 2024
Hibernation: Neural Aspects | Annual Reviews
www.annualreviews.org/content/journals/10.1146/annurev.ph.41.030179.001513
Jun 25, 2024
Seasonal and Regional Differences in Gene Expression in the Brain of a Hibernating Mammal
journals.plos.org/plosone/article?id=10.1371/journal.pone.0058427
Jun 25, 2024
11
Cross-Species Analysis of Single-Cell Transcriptomic Data
www.frontiersin.org/articles/10.3389/fcell.2019.00175/full
Jun 18, 2024
1
SCTransformで遺伝子数が減るのを防ぐ｜シングルセル解析あれこれ
zenn.dev/rchiji/books/fdd68b85675c8d/viewer/e527f5
Jun 18, 2024
1
Significance analysis for clustering with single-cell RNA-sequencing data - Nature Methods
www.nature.com/articles/s41592-023-01933-9
Jun 17, 2024
1
Selecting single cell clustering parameter values using subsampling-based robustness metrics - BMC Bioinformatics
bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-03957-4
Jun 17, 2024
1
Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data - Genome Biology
genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02622-0
Jun 14, 2024
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MultiK: an automated tool to determine optimal cluster numbers in single-cell RNA sequencing data - Genome Biology
genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02445-5
Jun 14, 2024
1
Chapter 12 Cell type annotation | Orchestrating Single-Cell Analysis with Bioconductor
bioconductor.org/books/3.12/OSCA/cell-type-annotation.html
Jun 13, 2024
1
A Guide to Glial Cell Markers
www.biocompare.com/Editorial-Articles/595024-A-Guide-to-Glial-Cell-Markers/
Jun 12, 2024
2
scRNA-Seq Cell Type Annotation: Common Approaches and Tools - BioTuring's Blog
blog.bioturing.com/2022/03/03/scrna-seq-cell-type-annotation-common-approaches-and-tools/
Jun 10, 2024
11
Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods - Nature Protocols
www.nature.com/articles/s41596-021-00534-0
Jun 10, 2024
1
Creating Single Cell References for Xenium Custom Panel Design from Seurat or AnnData - 10x Genomics
www.10xgenomics.com/analysis-guides/creating-single-cell-references-for-xenium-custom-panel-design-from-seurat-or-anndata
Jun 10, 2024
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Getting Started with Xenium Panel Design - Official 10x Genomics Support
www.10xgenomics.com/support/in-situ-gene-expression/documentation/steps/panel-design/xenium-panel-getting-started
Jun 10, 2024
43
A discrete neuronal circuit induces a hibernation-like state in rodents - Nature
www.nature.com/articles/s41586-020-2163-6
Jun 7, 2024
41
Benchmarking strategies for cross-species integration of single-cell RNA sequencing data - Nature Communications
www.nature.com/articles/s41467-023-41855-w
Jun 7, 2024
1
Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution - Nature Ecology & Evolution
www.nature.com/articles/s41559-023-02186-7
Jun 6, 2024
42
Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells
www.sciencedirect.com/science/article/pii/S0896627321008667
Jun 6, 2024
63
Thirst regulates motivated behavior through modulation of brainwide neural population dynamics
www.science.org/doi/10.1126/science.aav3932
Jun 6, 2024
1
Thirst-associated preoptic neurons encode an aversive motivational drive
www.science.org/doi/10.1126/science.aan6747
Jun 6, 2024
1
Molecular and cellular evolution of the primate dorsolateral prefrontal cortex
www.science.org/doi/10.1126/science.abo7257
Jun 6, 2024
1
Comparative transcriptomics reveals human-specific cortical features
www.science.org/doi/10.1126/science.ade9516
Jun 6, 2024
54