genken
@genken
Neuropathology/Alzheimer disease/PhD course/movies
Joined Jan 19, 2023
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New Map of Mouse Spinal Cord Provides a Reference for Science and Disease
zuckermaninstitute.columbia.edu/new-map-mouse-spinal-cord-provides-reference-science-and-disease
Dec 9, 2024
PACAP signaling in stress: insights from the chromaffin cell - Pflügers Archiv - European Journal of Physiology
link.springer.com/article/10.1007/s00424-017-2062-3
Dec 3, 2024
BPS Publications
bpspubs.onlinelibrary.wiley.com/doi/full/10.1111/j.1476-5381.2012.02045.x
Dec 3, 2024
1 Highlights
PACAP induces bradycardia in guinea-pig heart by stimulation of atrial cholinergic neurones - Naunyn-Schmiedeberg's Archives of Pharmacology
link.springer.com/article/10.1007/BF00168432
Dec 3, 2024
1 Highlights & 1 Notes
Role of PACAP in the physiology and pathology of the sympathoadrenal system
www.sciencedirect.com/science/article/abs/pii/S0091302207000568?via%3Dihub
Dec 3, 2024
NYAS Publications
nyaspubs.onlinelibrary.wiley.com/doi/full/10.1111/j.1749-6632.1998.tb11175.x?sid=nlm%3Apubmed
Dec 3, 2024
5 Highlights & 5 Notes
Pituitary Adenylate Cyclase‐Activating Polypeptide (PACAP) Regulation of Sympathetic Neuron Neuropeptide Y and Catecholamine Expression
onlinelibrary.wiley.com/doi/10.1046/j.1471-4159.1995.65030978.x
Dec 3, 2024
Pituitary Adenylate Cyclase-activating Polypeptides Directly Stimulate Sympathetic Neuron Neuropeptide Y Release through PAC1 Receptor Isoform Activation of Specific Intracellular Signaling Pathways
www.sciencedirect.com/science/article/pii/S0021925819521755?via%3Dihub
Dec 3, 2024
Frontiers | The Golgi Apparatus of Neocortical Glial Cells During Hibernation in the Syrian Hamster
www.frontiersin.org/journals/neuroanatomy/articles/10.3389/fnana.2019.00092/full
Nov 15, 2024
3 Highlights
How can I remove batch effects among samples in Cell Ranger?
kb.10xgenomics.com/hc/en-us/articles/360000559571-How-can-I-remove-batch-effects-among-samples-in-Cell-Ranger
Nov 8, 2024
1 Highlights
Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity | Hypertension
www.ahajournals.org/doi/10.1161/HYPERTENSIONAHA.120.15137?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
Nov 6, 2024
1 Highlights
Bioart
bioart.niaid.nih.gov/
Nov 5, 2024
Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat - Nature Communications
www.nature.com/articles/s41467-023-36800-w
Nov 3, 2024
Screening cell–cell communication in spatial transcriptomics via collective optimal transport - Nature Methods
www.nature.com/articles/s41592-022-01728-4
Oct 24, 2024
SCENIC: single-cell regulatory network inference and clustering - Nature Methods
www.nature.com/articles/nmeth.4463
Oct 23, 2024
Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data
academic.oup.com/nar/article/44/11/5010/2468313
Oct 23, 2024
REGGAE: a novel approach for the identification of key transcriptional regulators
academic.oup.com/bioinformatics/article/34/20/3503/4993882
Oct 23, 2024
Tools for efficient analysis of neurons in a 3D reference atlas of whole mouse spinal cord
www.sciencedirect.com/science/article/pii/S2667237521001260?via%3Dihub
Oct 18, 2024
1 Highlights
Onecut transcription factors act upstream of Isl1 to regulate spinal motoneuron diversification
journals.biologists.com/dev/article/139/17/3109/45273/Onecut-transcription-factors-act-upstream-of-Isl1
Oct 8, 2024
1 Highlights
Parallel Pbx-Dependent Pathways Govern the Coalescence and Fate of Motor Columns
www.sciencedirect.com/science/article/pii/S0896627316304597?via%3Dihub
Oct 7, 2024
The histone demethylase Kdm6b regulates subtype diversification of mouse spinal motor neurons during development - Nature Communications
www.nature.com/articles/s41467-022-28636-7
Oct 7, 2024
1 Highlights
A Postmitotic Role for Isl-Class LIM Homeodomain Proteins in the Assignment of Visceral Spinal Motor Neuron Identity
www.sciencedirect.com/science/article/pii/S089662730400011X?via%3Dihub
Oct 7, 2024
4 Highlights
Frontiers | Motor neurons and the generation of spinal motor neurons diversity
www.frontiersin.org/journals/cellular-neuroscience/articles/10.3389/fncel.2014.00293/full
Oct 6, 2024
1 Highlights
The Dorsal Aorta Initiates a Molecular Cascade That Instructs Sympatho-Adrenal Specification
www.science.org/doi/10.1126/science.1222369
Oct 4, 2024
Molecular Control of the Neural Crest and Peripheral Nervous System Development
www.sciencedirect.com/science/article/pii/S0070215314000088
Oct 4, 2024
3 Highlights & 1 Notes
Transcriptionally defined amygdala subpopulations play distinct roles in innate social behaviors - Nature Neuroscience
www.nature.com/articles/s41593-023-01475-5
Oct 2, 2024
Sexually Dimorphic Control of Parenting Behavior by the Medial Amygdala
www.sciencedirect.com/science/article/pii/S0092867419300571?via%3Dihub
Oct 2, 2024
Motor innervation directs the correct development of the mouse sympathetic nervous system - Nature Communications
www.nature.com/articles/s41467-024-51290-0
Oct 1, 2024
Frontiers | Modulation of the thermosensory system by oxytocin
www.frontiersin.org/journals/molecular-neuroscience/articles/10.3389/fnmol.2022.1075305/full
Sep 27, 2024
1 Highlights
MarkerMap: nonlinear marker selection for single-cell studies - npj Systems Biology and Applications
www.nature.com/articles/s41540-024-00339-3?fromPaywallRec=false
Sep 25, 2024
1 Highlights
A scalable SCENIC workflow for single-cell gene regulatory network analysis - Nature Protocols
www.nature.com/articles/s41596-020-0336-2
Sep 25, 2024
1 Highlights
Tiered sympathetic control of cardiac function revealed by viral tracing and single cell transcriptome profiling
elifesciences.org/articles/86295
Sep 25, 2024
1 Highlights
Opto-seq reveals input-specific immediate-early gene induction in ventral tegmental area cell types
www.sciencedirect.com/science/article/pii/S0896627324003738?via%3Dihub
Sep 24, 2024
2 Highlights
UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics
www.biorxiv.org/content/10.1101/2024.07.08.601384v1.full
Sep 19, 2024
1 Highlights
Single-cell and spatial atlases of spinal cord injury in the Tabulae Paralytica - Nature
www.nature.com/articles/s41586-024-07504-y
Sep 19, 2024
1 Highlights
Estrogen-sensitive medial preoptic area neurons coordinate torpor in mice - Nature Communications
www.nature.com/articles/s41467-020-20050-1
Sep 8, 2024
Why prefer the golden Syrian hamster (Mesocricetus auratus) to the Wistar rat in experimental studies on plasma lipoprotein metabolism?
www.sciencedirect.com/science/article/pii/0305049194900582
Aug 16, 2024
1 Highlights
A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality
www.sciencedirect.com/science/article/pii/S0092867418308031
Aug 15, 2024
1 Highlights
c-fos induction in the choroid plexus, tanycytes and pars tuberalis is an early indicator of spontaneous arousal from torpor in a deep hibernator
www.biorxiv.org/content/10.1101/2023.12.19.572338v2
Aug 7, 2024
1 Highlights
Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes
www.sciencedirect.com/science/article/pii/S0896627320309697?via%3Dihub
Jul 31, 2024
1 Highlights
ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists - Nature Communications
www.nature.com/articles/s41467-024-48188-2
Jul 24, 2024
1 Highlights
Library size normalization affects spatial domain identification - Nature Genetics
www.nature.com/articles/s41588-024-01815-6
Jul 24, 2024
1 Highlights
Multiscale topology classifies cells in subcellular spatial transcriptomics - Nature
www.nature.com/articles/s41586-024-07563-1
Jul 24, 2024
1 Highlights
scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis - Genome Biology
genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03299-3
Jul 24, 2024
1 Highlights
Visual analysis of spatial transcriptomics data with RedeViz
www.biorxiv.org/content/10.1101/2024.07.09.602652v1.full
Jul 24, 2024
1 Highlights
Visual analysis of spatial transcriptomics data with RedeViz
www.biorxiv.org/content/10.1101/2024.07.09.602652v1
Jul 24, 2024
1 Highlights
UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics
www.biorxiv.org/content/10.1101/2024.07.08.601384v1
Jul 24, 2024
1 Highlights
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Single-Cell, Single-Nucleus and Xenium-Based Spatial Transcriptomics Analyses Reveal Inflammatory Activation and Altered Cell Interactions in the Hippocampus in Mice with Temporal Lobe Epilepsy.
www.researchsquare.com/article/rs-4590465/v1
Jul 24, 2024
1 Highlights
A Hypothalamic Circuit that Modulates Feeding and Parenting Behaviors
www.biorxiv.org/content/10.1101/2024.07.22.604437v1
Jul 24, 2024
1 Highlights
A scalable platform for the development of cell-type-specific viral drivers
elifesciences.org/articles/48089
Jul 18, 2024
A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA - Scientific Reports
www.nature.com/articles/s41598-017-04426-w
Jul 2, 2024
1 Highlights
【R】トランスクリプトーム解析のためのGO解析まとめ
shiokoji11235.com/go-analysis-for-transcriptome-analysis
Jul 1, 2024
1 Highlights
Do descending influences alternate to produce episodic breathing?
www.sciencedirect.com/science/article/abs/pii/S0034568797000960?via%3Dihub
Jun 25, 2024
Autonomic control of circulation during the hibernating cycle in ground squirrels
physoc.onlinelibrary.wiley.com/doi/epdf/10.1113/jphysiol.1963.sp007204
Jun 25, 2024
Peripheral ghrelin stimulates feeding behavior and positive energy balance in a sciurid hibernator
www.sciencedirect.com/science/article/pii/S0018506X11000286?via%3Dihub
Jun 25, 2024
To eat or not to eat: the effect of AICAR on food intake regulation in yellow-bellied marmots (Marmota flaviventris)
journals.biologists.com/jeb/article/213/12/2031/9901/To-eat-or-not-to-eat-the-effect-of-AICAR-on-food
Jun 25, 2024
1 Highlights & 1 Notes
Towards understanding the neural origins of hibernation
journals.biologists.com/jeb/article/225/1/jeb229542/273864/Towards-understanding-the-neural-origins-of
Jun 25, 2024
6 Highlights & 3 Notes
Thermoregulatory inversion: a novel thermoregulatory paradigm | American Journal of Physiology-Regulatory, Integrative and Comparative Physiology
journals.physiology.org/doi/full/10.1152/ajpregu.00022.2017
Jun 25, 2024
Hibernation: Neural Aspects | Annual Reviews
www.annualreviews.org/content/journals/10.1146/annurev.ph.41.030179.001513
Jun 25, 2024
Seasonal and Regional Differences in Gene Expression in the Brain of a Hibernating Mammal
journals.plos.org/plosone/article?id=10.1371/journal.pone.0058427
Jun 25, 2024
1 Highlights & 1 Notes
Cross-Species Analysis of Single-Cell Transcriptomic Data
www.frontiersin.org/articles/10.3389/fcell.2019.00175/full
Jun 18, 2024
1 Highlights
SCTransformで遺伝子数が減るのを防ぐ｜シングルセル解析あれこれ
zenn.dev/rchiji/books/fdd68b85675c8d/viewer/e527f5
Jun 18, 2024
1 Highlights
Significance analysis for clustering with single-cell RNA-sequencing data - Nature Methods
www.nature.com/articles/s41592-023-01933-9
Jun 17, 2024
1 Highlights
Selecting single cell clustering parameter values using subsampling-based robustness metrics - BMC Bioinformatics
bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-03957-4
Jun 17, 2024
1 Highlights
Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data - Genome Biology
genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02622-0
Jun 14, 2024
23 Highlights & 1 Notes
MultiK: an automated tool to determine optimal cluster numbers in single-cell RNA sequencing data - Genome Biology
genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02445-5
Jun 14, 2024
1 Highlights
Chapter 12 Cell type annotation | Orchestrating Single-Cell Analysis with Bioconductor
bioconductor.org/books/3.12/OSCA/cell-type-annotation.html
Jun 13, 2024
1 Highlights
A Guide to Glial Cell Markers
www.biocompare.com/Editorial-Articles/595024-A-Guide-to-Glial-Cell-Markers/
Jun 12, 2024
2 Highlights
scRNA-Seq Cell Type Annotation: Common Approaches and Tools - BioTuring's Blog
blog.bioturing.com/2022/03/03/scrna-seq-cell-type-annotation-common-approaches-and-tools/
Jun 10, 2024
1 Highlights & 1 Notes
Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods - Nature Protocols
www.nature.com/articles/s41596-021-00534-0
Jun 10, 2024
1 Highlights
Creating Single Cell References for Xenium Custom Panel Design from Seurat or AnnData - 10x Genomics
www.10xgenomics.com/analysis-guides/creating-single-cell-references-for-xenium-custom-panel-design-from-seurat-or-anndata
Jun 10, 2024
6 Highlights & 3 Notes
Getting Started with Xenium Panel Design - Official 10x Genomics Support
www.10xgenomics.com/support/in-situ-gene-expression/documentation/steps/panel-design/xenium-panel-getting-started
Jun 10, 2024
4 Highlights & 3 Notes
A discrete neuronal circuit induces a hibernation-like state in rodents - Nature
www.nature.com/articles/s41586-020-2163-6
Jun 7, 2024
4 Highlights & 1 Notes
Benchmarking strategies for cross-species integration of single-cell RNA sequencing data - Nature Communications
www.nature.com/articles/s41467-023-41855-w
Jun 7, 2024
1 Highlights
Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution - Nature Ecology & Evolution
www.nature.com/articles/s41559-023-02186-7
Jun 6, 2024
4 Highlights & 2 Notes
Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells
www.sciencedirect.com/science/article/pii/S0896627321008667
Jun 6, 2024
6 Highlights & 3 Notes
Thirst regulates motivated behavior through modulation of brainwide neural population dynamics
www.science.org/doi/10.1126/science.aav3932
Jun 6, 2024
1 Highlights
Thirst-associated preoptic neurons encode an aversive motivational drive
www.science.org/doi/10.1126/science.aan6747
Jun 6, 2024
1 Highlights
Molecular and cellular evolution of the primate dorsolateral prefrontal cortex
www.science.org/doi/10.1126/science.abo7257
Jun 6, 2024
1 Highlights
Comparative transcriptomics reveals human-specific cortical features
www.science.org/doi/10.1126/science.ade9516
Jun 6, 2024
5 Highlights & 4 Notes
Regulation of Body Temperature by the Nervous System
www.sciencedirect.com/science/article/pii/S0896627318301430?via%3Dihub
Jun 4, 2024
Frontiers | Cellular Composition of the Preoptic Area Regulating Sleep, Parental, and Sexual Behavior
www.frontiersin.org/journals/neuroscience/articles/10.3389/fnins.2021.649159/full
Jun 4, 2024
Cold-sensitive ventromedial hypothalamic neurons control homeostatic thermogenesis and social interaction-associated hyperthermia
www.sciencedirect.com/science/article/pii/S155041312200184X
Jun 4, 2024
Frontiers | QPLOT Neurons—Converging on a Thermoregulatory Preoptic Neuronal Population
www.frontiersin.org/journals/neuroscience/articles/10.3389/fnins.2021.665762/full
Jun 4, 2024
1 Highlights
Organization of the hamster paraventricular hypothalamic nucleus
onlinelibrary.wiley.com/doi/abs/10.1002/cne.903320307?sid=nlm%3Apubmed
Jun 4, 2024
Sex-dependent regulation of social avoidance by oxytocin signaling in the ventral tegmental area
www.sciencedirect.com/science/article/pii/S0166432824000378?via%3Dihub
Jun 4, 2024
1 Highlights
Sex-dependent regulation of social reward by oxytocin receptors in the ventral tegmental area - Neuropsychopharmacology
www.nature.com/articles/s41386-018-0262-y
Jun 4, 2024
1 Highlights
Preoptic BRS3 neurons increase body temperature and heart rate via multiple pathways
www.sciencedirect.com/science/article/pii/S1550413121002187
Jun 4, 2024
CNGA3 acts as a cold sensor in hypothalamic neurons
elifesciences.org/articles/55370
Jun 3, 2024
2 Highlights
Frontiers | Molecular Basis of White Adipose Tissue Remodeling That Precedes and Coincides With Hibernation in the Syrian Hamster, a Food-Storing Hibernator
www.frontiersin.org/journals/physiology/articles/10.3389/fphys.2018.01973/full
Jun 3, 2024
1 Highlights
Decreases in body temperature and body mass constitute pre-hibernation remodelling in the Syrian golden hamster, a facultative mammalian hibernator | Royal Society Open Science
royalsocietypublishing.org/doi/10.1098/rsos.160002
Jun 3, 2024
6 Highlights & 4 Notes
Photoperiodic control of seasonal body weight cycles in hamsters
www.sciencedirect.com/science/article/abs/pii/0149763485900065?via%3Dihub
Jun 3, 2024
2 Highlights & 1 Notes
Cellular, Molecular, and Physiological Adaptations of Hibernation: The Solution to Environmental Challenges | Annual Reviews
www.annualreviews.org/content/journals/10.1146/annurev-cellbio-012820-095945
Jun 3, 2024
1 Highlights
Hibernation in a tropical primate - Nature
www.nature.com/articles/429825a
Jun 3, 2024
1 Highlights
Drivers of hibernation in the brown bear - Frontiers in Zoology
frontiersinzoology.biomedcentral.com/articles/10.1186/s12983-016-0140-6
Jun 3, 2024
1 Highlights
Hibernation in Black Bears: Independence of Metabolic Suppression from Body Temperature
www.science.org/doi/10.1126/science.1199435
Jun 3, 2024
1 Highlights
Codon‐improved Cre recombinase (iCre) expression in the mouse
onlinelibrary.wiley.com/doi/abs/10.1002/gene.10023?sid=nlm%3Apubmed
May 29, 2024
Visceral motor neuron diversity delineates a cellular basis for nipple- and pilo-erection muscle control - Nature Neuroscience
www.nature.com/articles/nn.4376
May 23, 2024
1 Highlights
Ensembl 2022
academic.oup.com/nar/article/50/D1/D988/6430486?login=true
May 21, 2024
1 Highlights
The pelvic organs receive no parasympathetic innervation
elifesciences.org/reviewed-preprints/91576v1
May 20, 2024
1 Highlights