genken

genken

@genken

Hibernation/Hypothalamus/Sympathetic Neuron/PostDoc/movies

Joined Jan 19, 2023

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Motor innervation directs the correct development of the mouse sympathetic nervous system - Nature Communications

www.nature.com/articles/s41467-024-51290-0

積読
視床下倶楽部
spinal cord
development

Oct 1, 2024

Frontiers | Modulation of the thermosensory system by oxytocin

www.frontiersin.org/journals/molecular-neuroscience/articles/10.3389/fnmol.2022.1075305/full

oxytocin
thermoregulation

Sep 27, 2024

1

MarkerMap: nonlinear marker selection for single-cell studies - npj Systems Biology and Applications

www.nature.com/articles/s41540-024-00339-3?fromPaywallRec=false

積読
scRNAseq

Sep 25, 2024

1

A scalable SCENIC workflow for single-cell gene regulatory network analysis - Nature Protocols

www.nature.com/articles/s41596-020-0336-2

積読
scRNAseq

Sep 25, 2024

1

Tiered sympathetic control of cardiac function revealed by viral tracing and single cell transcriptome profiling

elifesciences.org/articles/86295

積読
scRNAseq
自律神経

Sep 25, 2024

1

Opto-seq reveals input-specific immediate-early gene induction in ventral tegmental area cell types

www.sciencedirect.com/science/article/pii/S0896627324003738?via%3Dihub

積読
scRNAseq
Research tool

Sep 24, 2024

2

UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics

www.biorxiv.org/content/10.1101/2024.07.08.601384v1.full

Xenium
segmentation

Sep 19, 2024

1

Single-cell and spatial atlases of spinal cord injury in the Tabulae Paralytica - Nature

www.nature.com/articles/s41586-024-07504-y

spinal cord
scRNAseq

Sep 19, 2024

1

Estrogen-sensitive medial preoptic area neurons coordinate torpor in mice - Nature Communications

www.nature.com/articles/s41467-020-20050-1

thermoregulation
hypothalamus
preoptic area

Sep 8, 2024

Why prefer the golden Syrian hamster (Mesocricetus auratus) to the Wistar rat in experimental studies on plasma lipoprotein metabolism?

www.sciencedirect.com/science/article/pii/0305049194900582

syrian hamster

Aug 16, 2024

1

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

www.sciencedirect.com/science/article/pii/S0092867418308031

Aug 15, 2024

1

c-fos induction in the choroid plexus, tanycytes and pars tuberalis is an early indicator of spontaneous arousal from torpor in a deep hibernator

www.biorxiv.org/content/10.1101/2023.12.19.572338v2

hibernation
hamster
cFos

Aug 7, 2024

1

Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes

www.sciencedirect.com/science/article/pii/S0896627320309697?via%3Dihub

Jul 31, 2024

1

ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists - Nature Communications

www.nature.com/articles/s41467-024-48188-2

spatial TC
Research tool
scRNAseq
積読

Jul 24, 2024

1

Library size normalization affects spatial domain identification - Nature Genetics

www.nature.com/articles/s41588-024-01815-6

積読
spatial TC

Jul 24, 2024

1

Multiscale topology classifies cells in subcellular spatial transcriptomics - Nature

www.nature.com/articles/s41586-024-07563-1

spatial TC

Jul 24, 2024

1

scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis - Genome Biology

genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03299-3

spatial TC
scRNAseq
Research tool

Jul 24, 2024

1

Visual analysis of spatial transcriptomics data with RedeViz

www.biorxiv.org/content/10.1101/2024.07.09.602652v1.full

scRNAseq
Research tool
spatial TC

Jul 24, 2024

1

Visual analysis of spatial transcriptomics data with RedeViz

www.biorxiv.org/content/10.1101/2024.07.09.602652v1

spatial TC
scRNAseq
Research tool

Jul 24, 2024

1

UCS: a unified approach to cell segmentation for subcellular spatial transcriptomics

www.biorxiv.org/content/10.1101/2024.07.08.601384v1

spatial TC

Jul 24, 2024

1

Single-Cell, Single-Nucleus and Xenium-Based Spatial Transcriptomics Analyses Reveal Inflammatory Activation and Altered Cell Interactions in the Hippocampus in Mice with Temporal Lobe Epilepsy.

www.researchsquare.com/article/rs-4590465/v1

Xenium
spatial TC
scRNAseq
brain

Jul 24, 2024

1

A Hypothalamic Circuit that Modulates Feeding and Parenting Behaviors

www.biorxiv.org/content/10.1101/2024.07.22.604437v1

hypothalamus
preoptic area
養育行動
養育行動
scRNAseq
food intake

Jul 24, 2024

1

A scalable platform for the development of cell-type-specific viral drivers

elifesciences.org/articles/48089

PESCA
minipromoter
scRNAseq

Jul 18, 2024

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA - Scientific Reports

www.nature.com/articles/s41598-017-04426-w

Jul 2, 2024

1

【R】トランスクリプトーム解析のためのGO解析まとめ

shiokoji11235.com/go-analysis-for-transcriptome-analysis

Jul 1, 2024

1

Do descending influences alternate to produce episodic breathing?

www.sciencedirect.com/science/article/abs/pii/S0034568797000960?via%3Dihub

hibernation
機能的解析
機能的解析

Jun 25, 2024

Autonomic control of circulation during the hibernating cycle in ground squirrels

physoc.onlinelibrary.wiley.com/doi/epdf/10.1113/jphysiol.1963.sp007204

hibernation
自律神経
脳幹
脳幹
thermoregulation

Jun 25, 2024

Peripheral ghrelin stimulates feeding behavior and positive energy balance in a sciurid hibernator

www.sciencedirect.com/science/article/pii/S0018506X11000286?via%3Dihub

hibernation
food intake
hypothalamus

Jun 25, 2024

To eat or not to eat: the effect of AICAR on food intake regulation in yellow-bellied marmots (Marmota flaviventris)

journals.biologists.com/jeb/article/213/12/2031/9901/To-eat-or-not-to-eat-the-effect-of-AICAR-on-food

hibernation
marmot

Jun 25, 2024

11

Towards understanding the neural origins of hibernation

journals.biologists.com/jeb/article/225/1/jeb229542/273864/Towards-understanding-the-neural-origins-of

hibernation
brain

Jun 25, 2024

63

Thermoregulatory inversion: a novel thermoregulatory paradigm | American Journal of Physiology-Regulatory, Integrative and Comparative Physiology

journals.physiology.org/doi/full/10.1152/ajpregu.00022.2017

hibernation
rat
hypothalamus
preoptic area
積読

Jun 25, 2024

Hibernation: Neural Aspects | Annual Reviews

www.annualreviews.org/content/journals/10.1146/annurev.ph.41.030179.001513

hibernation

Jun 25, 2024

Seasonal and Regional Differences in Gene Expression in the Brain of a Hibernating Mammal

journals.plos.org/plosone/article?id=10.1371/journal.pone.0058427

hibernation
積読
brain
hypothalamus

Jun 25, 2024

11

Cross-Species Analysis of Single-Cell Transcriptomic Data

www.frontiersin.org/articles/10.3389/fcell.2019.00175/full

種間比較
scRNAseq
review

Jun 18, 2024

1

SCTransformで遺伝子数が減るのを防ぐ|シングルセル解析あれこれ

zenn.dev/rchiji/books/fdd68b85675c8d/viewer/e527f5

scRNAseq
seurat

Jun 18, 2024

1

Significance analysis for clustering with single-cell RNA-sequencing data - Nature Methods

www.nature.com/articles/s41592-023-01933-9

積読
scRNAseq
Research tool

Jun 17, 2024

1

Selecting single cell clustering parameter values using subsampling-based robustness metrics - BMC Bioinformatics

bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-03957-4

scRNAseq
Research tool
積読

Jun 17, 2024

1

Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data - Genome Biology

genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02622-0

scRNAseq
Research tool

Jun 14, 2024

231

MultiK: an automated tool to determine optimal cluster numbers in single-cell RNA sequencing data - Genome Biology

genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02445-5

scRNAseq
Research tool

Jun 14, 2024

1

Chapter 12 Cell type annotation | Orchestrating Single-Cell Analysis with Bioconductor

bioconductor.org/books/3.12/OSCA/cell-type-annotation.html

scRNAseq
Research tool
annotation

Jun 13, 2024

1

A Guide to Glial Cell Markers

www.biocompare.com/Editorial-Articles/595024-A-Guide-to-Glial-Cell-Markers/

Jun 12, 2024

2

scRNA-Seq Cell Type Annotation: Common Approaches and Tools - BioTuring's Blog

blog.bioturing.com/2022/03/03/scrna-seq-cell-type-annotation-common-approaches-and-tools/

scRNAseq
annotation

Jun 10, 2024

11

Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods - Nature Protocols

www.nature.com/articles/s41596-021-00534-0

scRNAseq

Jun 10, 2024

1

Creating Single Cell References for Xenium Custom Panel Design from Seurat or AnnData - 10x Genomics

www.10xgenomics.com/analysis-guides/creating-single-cell-references-for-xenium-custom-panel-design-from-seurat-or-anndata

Xenium
scRNAseq

Jun 10, 2024

63

Getting Started with Xenium Panel Design - Official 10x Genomics Support

www.10xgenomics.com/support/in-situ-gene-expression/documentation/steps/panel-design/xenium-panel-getting-started

Xenium
scRNAseq

Jun 10, 2024

43

A discrete neuronal circuit induces a hibernation-like state in rodents - Nature

www.nature.com/articles/s41586-020-2163-6

hibernation
check up later

Jun 7, 2024

41

Benchmarking strategies for cross-species integration of single-cell RNA sequencing data - Nature Communications

www.nature.com/articles/s41467-023-41855-w

scRNAseq
種間比較
種間比較

Jun 7, 2024

1

Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution - Nature Ecology & Evolution

www.nature.com/articles/s41559-023-02186-7

scRNAseq
種間比較
種間比較
evolution

Jun 6, 2024

42

Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells

www.sciencedirect.com/science/article/pii/S0896627321008667

scRNAseq
種間比較
練習用

Jun 6, 2024

63

Thirst regulates motivated behavior through modulation of brainwide neural population dynamics

www.science.org/doi/10.1126/science.aav3932

積読
thirst

Jun 6, 2024

1

Thirst-associated preoptic neurons encode an aversive motivational drive

www.science.org/doi/10.1126/science.aan6747

積読
thirst

Jun 6, 2024

1