genken

genken

@genken

Hibernation/Hypothalamus/Sympathetic Neuron/PostDoc/movies

Joined Jan 19, 2023

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7

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Neuron-derived neuropeptide Y fine-tunes the splenic immune responses

www.cell.com/neuron/fulltext/S0896-6273(22)00046-0

LPS
交感神経

Jun 2, 2025

1

Acute sleep deprivation (ASD) and cardioprotection: Impact of ASD on oxytocin-mediated sympathetic nervous activation preceding myocardial infarction

www.sciencedirect.com/science/article/abs/pii/S0143417924000520

交感神経

May 30, 2025

1

Paraventricular nucleus CRH neurons regulate acute lung injury via sympathetic nerve–neutrophil axis

www.researchgate.net/publication/388690598_Paraventricular_nucleus_CRH_neurons_regulate_acute_lung_injury_via_sympathetic_nerve-neutrophil_axis

CRH neurons

May 30, 2025

1

Splenic stromal niches in homeostasis and immunity - Nature Reviews Immunology

www.nature.com/articles/s41577-023-00857-x?fromPaywallRec=false

May 28, 2025

1

RGAST: A Relational Graph Attention Network for Multi-Scale Cell-Cell Communication Inference from Spatial Transcriptomics

www.biorxiv.org/content/10.1101/2024.08.09.607420v2

spatial TC
Research tool

May 27, 2025

1

属性でオブジェクトを選択

affinity.help/designer2/ja.lproj/index.html?page=pages/ObjectControl/selectByAttribute.html&title=%E5%B1%9E%E6%80%A7%E3%81%A7%E3%82%AA%E3%83%96%E3%82%B8%E3%82%A7%E3%82%AF%E3%83%88%E3%82%92%E9%81%B8%E6%8A%9E

affinity designer

May 27, 2025

データハンドリング入門

kazutan.github.io/kazutanR/hands_on_170730/index.html

R
Research tool
scRNAseq

May 27, 2025

〽️【Plot】クラスター×条件のDEGを見比べる|シングルセル解析あれこれ

zenn.dev/rchiji/books/fdd68b85675c8d/viewer/943304

scRNAseq
Research tool

May 26, 2025

1

Progressive Increase in Renal Sympathetic Nerve Activity Induced by Cold Exposure | Hypertension

www.ahajournals.org/doi/10.1161/HYPERTENSIONAHA.124.23499?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed

寒冷暴露
交感神経

May 26, 2025

1

Mapping the spatial transcriptomic signature of the hippocampus during memory consolidation - Nature Communications

www.nature.com/articles/s41467-023-41715-7

spatial TC
neuronal activation

May 25, 2025

1

Spatial transcriptomics reveal neuron–astrocyte synergy in long-term memory - Nature

www.nature.com/articles/s41586-023-07011-6

spatial TC
neuronal activation

May 25, 2025

1

Integrating physiological and transcriptomic analyses at the single-neuron level

www.sciencedirect.com/science/article/pii/S0168010224000658

spatial TC
neuronal activation

May 25, 2025

1

A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain - Nature

www.nature.com/articles/s41586-023-06812-z

May 23, 2025

Distinct transcriptional programs define a heterogeneous neuronal ensemble for social interaction

www.sciencedirect.com/science/article/pii/S2589004224015803?via%3Dihub

scRNAseq
積読
Act-seq

May 23, 2025

1

High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing

www.cell.com/cell/fulltext/S0092-8674(19)31074-8

connectome
neuroanatomy
BARseq

May 20, 2025

Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections - Nature Neuroscience

www.nature.com/articles/s41593-021-00842-4

BARseq
neuroanatomy
connectome

May 20, 2025

Massive multiplexing of spatially resolved single neuron projections with axonal BARseq - Nature Communications

www.nature.com/articles/s41467-024-52756-x

neuroanatomy
connectome
BARseq

May 20, 2025

Whole-cortex in situ sequencing reveals input-dependent area identity - Nature

www.nature.com/articles/s41586-024-07221-6

connectome
BARseq
neuroanatomy

May 20, 2025

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing

elifesciences.org/reviewed-preprints/87866

neuroanatomy
connectome
BARseq

May 20, 2025

A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex - Nature Neuroscience

www.nature.com/articles/s41593-022-01219-x

neuroanatomy
connectome

May 20, 2025

Reconstruct a Connectome of Single Neurons in Mouse Brains by Cross-Validating Multi-Scale Multi-Modality Data

www.biorxiv.org/content/10.1101/2024.10.01.616182v1

connectome
neuroanatomy

May 20, 2025

1

ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics

academic.oup.com/bioinformatics/article/39/10/btad622/7319364?login=true

Research tool
scRNAseq

May 20, 2025

1

A practical guide for single-cell transcriptome data analysis in neuroscience

www.sciencedirect.com/science/article/pii/S0168010225000653?via%3Dihub

積読
scRNAseq

May 16, 2025

1

Nicheformer: A Foundation Model for Single-Cell and Spatial Omics

papers.ssrn.com/sol3/papers.cfm?abstract_id=4803291

spatial TC
scRNAseq
Research tool

May 15, 2025

1

Reflex control of inflammation by sympathetic nerves, not the vagus

physoc.onlinelibrary.wiley.com/doi/10.1113/jphysiol.2013.268573

LPS
交感神経
spleen

May 12, 2025

1

Spatially resolved molecular and cellular atlas of the mouse brain

www.biorxiv.org/content/10.1101/2023.12.03.569501v1.full.pdf+html

scRNAseq
resource
spatial TC
development

May 10, 2025

1

Transcriptional conservation and evolutionary divergence of cell types across mammalian hypothalamus development

www.cell.com/developmental-cell/fulltext/S1534-5807(25)00156-X

hypothalamus
development
scRNAseq
resource
spatial TC

May 10, 2025

1

Using deep learning to quantify neuronal activation from single-cell and spatial transcriptomic data - Nature Communications

www.nature.com/articles/s41467-023-44503-5

spatial TC
neuronal activation
scRNAseq

May 2, 2025

1

Neuroendocrinology of Energy Homeostasis – Comparative Endocrinology

uw.pressbooks.pub/comparativeendocrinology/chapter/neuroendocrinology-of-energy-homeostasis/

体温調節
体温調節
体温制御
preoptic area
review

May 2, 2025

scRNAseq analysis functions. Developed using Seurat framework.

nmikolajewicz.github.io/scMiko/index.html

Seurat
scRNAseq
bioinformatics
Research tool

Apr 21, 2025

1

Single sample scoring of molecular phenotypes - BMC Bioinformatics

bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2435-4

bioinformatics
scRNAseq
Research tool

Apr 17, 2025

1

3群以上で比較する前に必ず読もう!普通には検定できないって知ってますか?

toukeidesign.sozaiya-san.com/advance_stats14_3-group-test

統計
design

Apr 14, 2025

1

Autophagy and Akt-mTOR signaling display periodic oscillations during torpor-arousal cycles in oxidative skeletal muscle of Daurian ground squirrels (Spermophilus dauricus) - Journal of Comparative Physiology B

link.springer.com/article/10.1007/s00360-019-01245-5

autophagy
hibernation

Apr 11, 2025

1

Nutrient-sensing AgRP neurons relay control of liver autophagy during energy deprivation

www.sciencedirect.com/science/article/pii/S1550413123001249?pes=vor&utm_source=scopus&getft_integrator=scopus

autophagy
AgRP
積読

Apr 10, 2025

1

Mitophagy is required for brown adipose tissue mitochondrial homeostasis during cold challenge - Scientific Reports

www.nature.com/articles/s41598-018-26394-5

cold tolerance
BAT

Apr 10, 2025

Chronic cold exposure induces autophagy to promote fatty acid oxidation, mitochondrial turnover, and thermogenesis in brown adipose tissue

www.sciencedirect.com/science/article/pii/S2589004221004028?via%3Dihub

autophagy
cold tolerance
thermogenesis

Apr 10, 2025

1

A parabrachial-hypothalamic parallel circuit governs cold defense in mice - Nature Communications

www.nature.com/articles/s41467-023-40504-6

積読
体温調節
hypothalamus

Apr 8, 2025

1

Mouse embryonic stem cells embody organismal-level cold resistance

www.sciencedirect.com/science/article/pii/S2211124723009658?via%3Dihub

cold tolerance
hibernation

Apr 8, 2025

1

iPSCs from a Hibernator Provide a Platform for Studying Cold Adaptation and Its Potential Medical Applications

www.sciencedirect.com/science/article/pii/S0092867418302903?via%3Dihub

hibernation
cold tolerance

Apr 8, 2025

1

Coping with the stress: Expression of ATF4, ATF6, and downstream targets in organs of hibernating ground squirrels

www.sciencedirect.com/science/article/pii/S000398610800266X?via%3Dihub

hibernation
cold tolerance

Apr 8, 2025

1

RBM3 mediates structural plasticity and protective effects of cooling in neurodegeneration - Nature

www.nature.com/articles/nature14142

hibernation
cold tolerance
積読

Apr 8, 2025

Molecular Prerequisites for Diminished Cold Sensitivity in Ground Squirrels and Hamsters

www.sciencedirect.com/science/article/pii/S2211124717317503?via%3Dihub

hibernation
cold tolerance

Apr 8, 2025

1

AIDA directly connects sympathetic innervation to adaptive thermogenesis by UCP1 - Nature Cell Biology

www.nature.com/articles/s41556-021-00642-9

hibernation
sympathetic nervous system
体温制御

Apr 8, 2025

1

Multi-species genome-wide CRISPR screens identify conserved suppressors of cold-induced cell death

www.biorxiv.org/content/10.1101/2024.07.25.605098v4

cold tolerance
hibernation

Apr 8, 2025

1

Graph-based Contrastive Learning Enables Unified Integration and Niche Transfer Across Single-Cell and Spatial Multi-Omics

www.biorxiv.org/content/10.1101/2025.02.19.638965v1

spatial TC
Research tool

Apr 8, 2025

1

mcDETECT: Decoding 3D Spatial Synaptic Transcriptomes with Subcellular-Resolution Spatial Transcriptomics

www.biorxiv.org/content/10.1101/2025.03.27.645744v1?ct=

spatial transcriptomics
Alzheimer's disease
Research tool

Apr 8, 2025

1

future/README_ja.md at develop · futureverse/future

github.com/futureverse/future/blob/develop/README_ja.md

R
future package
Research tool

Apr 2, 2025

11

Seasonal variation in thyrotropin-releasing hormone (TRH) content of different brain regions and the pineal in the mammalian hibernator, Citellus lateralis - PubMed

pubmed.ncbi.nlm.nih.gov/6801738/

Trh
hibernation

Mar 29, 2025

Single-cell transcriptomic analysis of the lateral hypothalamic area reveals molecularly distinct populations of inhibitory and excitatory neurons - Nature Neuroscience

www.nature.com/articles/s41593-019-0349-8

scRNAseq
LHA

Mar 29, 2025

Gene expression markers of identity classes — FindMarkers

satijalab.org/seurat/reference/findmarkers

seurat
scRNAseq
bioinformatics

Mar 28, 2025

11