RGAST: A Relational Graph Attention Network for Multi-Scale Cell-Cell Communication Inference from Spatial Transcriptomics
www.biorxiv.org/content/10.1101/2024.08.09.607420v2
May 27, 2025
1
属性でオブジェクトを選択
affinity.help/designer2/ja.lproj/index.html?page=pages/ObjectControl/selectByAttribute.html&title=%E5%B1%9E%E6%80%A7%E3%81%A7%E3%82%AA%E3%83%96%E3%82%B8%E3%82%A7%E3%82%AF%E3%83%88%E3%82%92%E9%81%B8%E6%8A%9E
May 27, 2025
データハンドリング入門
kazutan.github.io/kazutanR/hands_on_170730/index.html
May 27, 2025
〽️【Plot】クラスター×条件のDEGを見比べる｜シングルセル解析あれこれ
zenn.dev/rchiji/books/fdd68b85675c8d/viewer/943304
May 26, 2025
1
Progressive Increase in Renal Sympathetic Nerve Activity Induced by Cold Exposure | Hypertension
www.ahajournals.org/doi/10.1161/HYPERTENSIONAHA.124.23499?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%20%200pubmed
May 26, 2025
1
Mapping the spatial transcriptomic signature of the hippocampus during memory consolidation - Nature Communications
www.nature.com/articles/s41467-023-41715-7
May 25, 2025
1
Spatial transcriptomics reveal neuron–astrocyte synergy in long-term memory - Nature
www.nature.com/articles/s41586-023-07011-6
May 25, 2025
1
Integrating physiological and transcriptomic analyses at the single-neuron level
www.sciencedirect.com/science/article/pii/S0168010224000658
May 25, 2025
1
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain - Nature
www.nature.com/articles/s41586-023-06812-z
May 23, 2025
Distinct transcriptional programs define a heterogeneous neuronal ensemble for social interaction
www.sciencedirect.com/science/article/pii/S2589004224015803?via%3Dihub
May 23, 2025
1
High-Throughput Mapping of Long-Range Neuronal Projection Using In Situ Sequencing
www.cell.com/cell/fulltext/S0092-8674(19)31074-8
May 20, 2025
Integrating barcoded neuroanatomy with spatial transcriptional profiling enables identification of gene correlates of projections - Nature Neuroscience
www.nature.com/articles/s41593-021-00842-4
May 20, 2025
Massive multiplexing of spatially resolved single neuron projections with axonal BARseq - Nature Communications
www.nature.com/articles/s41467-024-52756-x
May 20, 2025
Whole-cortex in situ sequencing reveals input-dependent area identity - Nature
www.nature.com/articles/s41586-024-07221-6
May 20, 2025
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
elifesciences.org/reviewed-preprints/87866
May 20, 2025
A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex - Nature Neuroscience
www.nature.com/articles/s41593-022-01219-x
May 20, 2025
Reconstruct a Connectome of Single Neurons in Mouse Brains by Cross-Validating Multi-Scale Multi-Modality Data
www.biorxiv.org/content/10.1101/2024.10.01.616182v1
May 20, 2025
1
ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics
academic.oup.com/bioinformatics/article/39/10/btad622/7319364?login=true
May 20, 2025
1
A practical guide for single-cell transcriptome data analysis in neuroscience
www.sciencedirect.com/science/article/pii/S0168010225000653?via%3Dihub
May 16, 2025
1
Nicheformer: A Foundation Model for Single-Cell and Spatial Omics
papers.ssrn.com/sol3/papers.cfm?abstract_id=4803291
May 15, 2025
1
Reflex control of inflammation by sympathetic nerves, not the vagus
physoc.onlinelibrary.wiley.com/doi/10.1113/jphysiol.2013.268573
May 12, 2025
1
Spatially resolved molecular and cellular atlas of the mouse brain
www.biorxiv.org/content/10.1101/2023.12.03.569501v1.full.pdf+html
May 10, 2025
1
Transcriptional conservation and evolutionary divergence of cell types across mammalian hypothalamus development
www.cell.com/developmental-cell/fulltext/S1534-5807(25)00156-X
May 10, 2025
1
Using deep learning to quantify neuronal activation from single-cell and spatial transcriptomic data - Nature Communications
www.nature.com/articles/s41467-023-44503-5
May 2, 2025
1
Neuroendocrinology of Energy Homeostasis – Comparative Endocrinology
uw.pressbooks.pub/comparativeendocrinology/chapter/neuroendocrinology-of-energy-homeostasis/
May 2, 2025
scRNAseq analysis functions. Developed using Seurat framework.
nmikolajewicz.github.io/scMiko/index.html
Apr 21, 2025
1
Single sample scoring of molecular phenotypes - BMC Bioinformatics
bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2435-4
Apr 17, 2025
1
３群以上で比較する前に必ず読もう！普通には検定できないって知ってますか？
toukeidesign.sozaiya-san.com/advance_stats14_3-group-test
Apr 14, 2025
1
Autophagy and Akt-mTOR signaling display periodic oscillations during torpor-arousal cycles in oxidative skeletal muscle of Daurian ground squirrels (Spermophilus dauricus) - Journal of Comparative Physiology B
link.springer.com/article/10.1007/s00360-019-01245-5
Apr 11, 2025
1
Nutrient-sensing AgRP neurons relay control of liver autophagy during energy deprivation
www.sciencedirect.com/science/article/pii/S1550413123001249?pes=vor&utm_source=scopus&getft_integrator=scopus
Apr 10, 2025
1
Mitophagy is required for brown adipose tissue mitochondrial homeostasis during cold challenge - Scientific Reports
www.nature.com/articles/s41598-018-26394-5
Apr 10, 2025
Chronic cold exposure induces autophagy to promote fatty acid oxidation, mitochondrial turnover, and thermogenesis in brown adipose tissue
www.sciencedirect.com/science/article/pii/S2589004221004028?via%3Dihub
Apr 10, 2025
1
A parabrachial-hypothalamic parallel circuit governs cold defense in mice - Nature Communications
www.nature.com/articles/s41467-023-40504-6
Apr 8, 2025
1
Mouse embryonic stem cells embody organismal-level cold resistance
www.sciencedirect.com/science/article/pii/S2211124723009658?via%3Dihub
Apr 8, 2025
1
iPSCs from a Hibernator Provide a Platform for Studying Cold Adaptation and Its Potential Medical Applications
www.sciencedirect.com/science/article/pii/S0092867418302903?via%3Dihub
Apr 8, 2025
1
Coping with the stress: Expression of ATF4, ATF6, and downstream targets in organs of hibernating ground squirrels
www.sciencedirect.com/science/article/pii/S000398610800266X?via%3Dihub
Apr 8, 2025
1
RBM3 mediates structural plasticity and protective effects of cooling in neurodegeneration - Nature
www.nature.com/articles/nature14142
Apr 8, 2025
Molecular Prerequisites for Diminished Cold Sensitivity in Ground Squirrels and Hamsters
www.sciencedirect.com/science/article/pii/S2211124717317503?via%3Dihub
Apr 8, 2025
1
AIDA directly connects sympathetic innervation to adaptive thermogenesis by UCP1 - Nature Cell Biology
www.nature.com/articles/s41556-021-00642-9
Apr 8, 2025
1
Multi-species genome-wide CRISPR screens identify conserved suppressors of cold-induced cell death
www.biorxiv.org/content/10.1101/2024.07.25.605098v4
Apr 8, 2025
1
Graph-based Contrastive Learning Enables Unified Integration and Niche Transfer Across Single-Cell and Spatial Multi-Omics
www.biorxiv.org/content/10.1101/2025.02.19.638965v1
Apr 8, 2025
1
mcDETECT: Decoding 3D Spatial Synaptic Transcriptomes with Subcellular-Resolution Spatial Transcriptomics
www.biorxiv.org/content/10.1101/2025.03.27.645744v1?ct=
Apr 8, 2025
1
future/README_ja.md at develop · futureverse/future
github.com/futureverse/future/blob/develop/README_ja.md
Apr 2, 2025
11
Seasonal variation in thyrotropin-releasing hormone (TRH) content of different brain regions and the pineal in the mammalian hibernator, Citellus lateralis - PubMed
pubmed.ncbi.nlm.nih.gov/6801738/
Mar 29, 2025
Single-cell transcriptomic analysis of the lateral hypothalamic area reveals molecularly distinct populations of inhibitory and excitatory neurons - Nature Neuroscience
www.nature.com/articles/s41593-019-0349-8
Mar 29, 2025
Gene expression markers of identity classes — FindMarkers
satijalab.org/seurat/reference/findmarkers
Mar 28, 2025
11
RStudio Server
chromium3.cdb.riken.jp/
Feb 21, 2025
1
Spatial transcriptomics and single-nucleus RNA sequencing reveal a transcriptomic atlas of adult human spinal cord
elifesciences.org/articles/92046
Feb 3, 2025
1
Neuroinflammation in the NTS is associated with changes in cardiovascular reflexes during systemic inflammation - Journal of Neuroinflammation
jneuroinflammation.biomedcentral.com/articles/10.1186/s12974-019-1512-6
Jan 15, 2025
1
Cold Exposure and the Metabolism of Mice, Men, and Other Wonderful Creatures | Physiology
journals.physiology.org/doi/full/10.1152/physiol.00002.2022?rfr_dat=cr_pub++0pubmed&url_ver=Z39.88-2003&rfr_id=ori%3Arid%3Acrossref.org
Jan 10, 2025