Software | Molecular Neuroengineering Lab
www.seas.upenn.edu/~molneuro/software.html
May 3, 2024
1
An integrated microfluidic/microelectrode array for the study of activity-dependent intracellular dynamics in neuronal networks - Lab on a Chip (RSC Publishing) DOI:10.1039/C8LC00694F
pubs.rsc.org/en/content/articlehtml/2018/lc/c8lc00694f
May 3, 2024
2
Automated quantification of neuronal networks and single-cell calcium dynamics using calcium imaging
www.sciencedirect.com/science/article/pii/S0165027015000217
May 3, 2024
71
Faster Gastrointestinal Transit, Reduced Small Intestinal Smooth Muscle Tone and Dysmotility in the Nlgn3R451C Mouse Model of Autism
www.mdpi.com/1422-0067/25/2/832
May 3, 2024
1
GutMap: A New Interface for Analysing Regional Motility Patterns in ex vivo Mouse Gastrointestinal Preparations
bio-protocol.org/en/bpdetail?id=4831&type=0&searchid=BM1711584000021453&sort=8
May 2, 2024
1
Robust single particle tracking in live cell time-lapse sequences
www.ncbi.nlm.nih.gov/pmc/articles/PMC2747604/
May 2, 2024
2
Dissection of molecular assembly dynamics by tracking orientation and position of single molecules in live cells
www.ncbi.nlm.nih.gov/pmc/articles/PMC5081662/
May 2, 2024
1
Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions | Proceedings of the National Academy of Sciences
www.pnas.org/doi/full/10.1073/pnas.1701136114
May 2, 2024
3
Automated characterization and monitoring of material shape using Riemannian geometry
www.sciencedirect.com/science/article/pii/S0098135423003952
May 2, 2024
7
Gene-by-environment interactions in plants: Molecular mechanisms, environmental drivers, and adaptive plasticity
www.ncbi.nlm.nih.gov/pmc/articles/PMC9806611/
May 2, 2024
6
Receptors, sparks and waves in a fire-diffuse-fire framework for calcium release
www.sciencedirect.com/science/article/pii/S0079610704000276
May 2, 2024
19
A ROS-Assisted Calcium Wave Dependent on the AtRBOHD NADPH Oxidase and TPC1 Cation Channel Propagates the Systemic Response to Salt Stress
academic.oup.com/plphys/article/171/3/1771/6115258
May 2, 2024
13
Temporal integration of auxin information for the regulation of patterning
www.ncbi.nlm.nih.gov/pmc/articles/PMC7205470/
May 2, 2024
13
The fast and the furious: rapid long-range signaling in plants
www.ncbi.nlm.nih.gov/pmc/articles/PMC8133610/
May 2, 2024
7
Integration of Electrical Signals and Phytohormones in the Control of Systemic Response
www.ncbi.nlm.nih.gov/pmc/articles/PMC9821543/
May 2, 2024
5
Monte Carlo extrinsic estimators of manifold-valued parameters
ieeexplore.ieee.org/document/978385
May 2, 2024
9
Diffusion maps for high-dimensional single-cell analysis of differentiation data
academic.oup.com/bioinformatics/article/31/18/2989/241305
May 1, 2024
5
Riemannian Procrustes Analysis : Transfer Learning for Brain-Computer Interfaces
hal.science/hal-01971856
May 1, 2024
1
Data analysis using Riemannian geometry and applications to chemical engineering
www.sciencedirect.com/science/article/pii/S009813542200357X
May 1, 2024
5
Accuracy of vascular tortuosity measures using computational modelling - Scientific Reports
www.nature.com/articles/s41598-022-04796-w
May 1, 2024
3
Loss of a highly conserved sterile alpha motif domain gene (WEEP) results in pendulous branch growth in peach trees | Proceedings of the National Academy of Sciences
www.pnas.org/doi/10.1073/pnas.1704515115
May 1, 2024
9
Cytoplasmic MTOCs control spindle orientation for asymmetric cell division in plants | Proceedings of the National Academy of Sciences
www.pnas.org/doi/full/10.1073/pnas.1713925114
May 1, 2024
5
Cytoplasmic MTOCs control spindle orientation for asymmetric cell division in plants
www.ncbi.nlm.nih.gov/pmc/articles/PMC5651782/
May 1, 2024
1
Cell polarity: compassing cell division and differentiation in plants
www.ncbi.nlm.nih.gov/pmc/articles/PMC7183757/
May 1, 2024
4
SABRE populates ER domains essential for cell plate maturation and cell expansion influencing cell and tissue patterning
www.ncbi.nlm.nih.gov/pmc/articles/PMC7987345/
May 1, 2024
1
Tutorial on Riemannian Geometry for Scientific Visualization (2022) | KAUST High-Performance Visualization Group
vccvisualization.org/RiemannianGeometryTutorial/
May 1, 2024
1
Applications of random field theory to electrophysiology
www.sciencedirect.com/science/article/pii/S0304394004013369
May 1, 2024
6
The relationship between red blood cell deformability metrics and perfusion of an artificial microvascular network
www.ncbi.nlm.nih.gov/pmc/articles/PMC3766416/
May 1, 2024
6
Deterioration of red blood cell mechanical properties is reduced in anaerobic storage
www.ncbi.nlm.nih.gov/pmc/articles/PMC4731343/
May 1, 2024
2
Development of a flow standard to enable highly reproducible measurements of deformability of stored red blood cells in a microfluidic device
onlinelibrary.wiley.com/doi/full/10.1111/trf.15770
May 1, 2024
1
Comparative Dynamics of Retrograde Actin Flow and Focal Adhesions: Formation of Nascent Adhesions Triggers Transition from Fast to Slow Flow
journals.plos.org/plosone/article?id=10.1371/journal.pone.0003234
May 1, 2024
4
Lifeact: a versatile marker to visualize F-actin
www.ncbi.nlm.nih.gov/pmc/articles/PMC2814344/
May 1, 2024
2
Fluorescent Dyes
www.leica-microsystems.com/science-lab/life-science/fluorescent-dyes/
May 1, 2024
1
LYK4, a Lysin Motif Receptor-Like Kinase, Is Important for Chitin Signaling and Plant Innate Immunity in Arabidopsis
www.ncbi.nlm.nih.gov/pmc/articles/PMC3440214/
Apr 30, 2024
1
A PIIB-type Ca2+-ATPase is essential for stress adaptation in Physcomitrella patens
www.ncbi.nlm.nih.gov/pmc/articles/PMC2614799/
Apr 30, 2024
1
Abiotic stress, the field environment and stress combination
www.sciencedirect.com/science/article/pii/S1360138505002918?via%3Dihub
Apr 30, 2024
18
Plasma Membrane Cyclic Nucleotide Gated Calcium Channels Control Land Plant Thermal Sensing and Acquired Thermotolerance
www.ncbi.nlm.nih.gov/pmc/articles/PMC3462635/
Apr 30, 2024
1
Long-Term Growth of Moss in Microfluidic Devices Enables Subcellular Studies in Development
www.ncbi.nlm.nih.gov/pmc/articles/PMC5074637/
Apr 30, 2024
1
Strengths and limitations of morphological and behavioral analyses in detecting dopaminergic deficiency in Caenorhabditis elegans
www.sciencedirect.com/science/article/pii/S0161813X19300695
Apr 24, 2024
1
Assessing locomotory rate in response to food for the identification of neuronal and muscular defects in C. elegans
star-protocols.cell.com/protocols/3216
Apr 24, 2024
1
Single swim sessions in C. elegans induce key features of mammalian exercise - art_253A10.1186_252Fs12915-017-0368-4.pdf
d-nb.info/1130756556/34
Apr 24, 2024
1
Swimming exercise reduces native ⍺-synuclein protein species in a transgenic C. elegans model of Parkinson’s disease.
www.ncbi.nlm.nih.gov/pmc/articles/PMC8243224/
Apr 24, 2024
1
Optical spectroscopy and microscopy techniques for assessment of neurological diseases
www.tandfonline.com/doi/full/10.1080/05704928.2020.1851237
Apr 24, 2024
1
α-Synuclein aggregation in the olfactory bulb induces olfactory deficits by perturbing granule cells and granular–mitral synaptic transmission - npj Parkinson's Disease
www.nature.com/articles/s41531-021-00259-7
Apr 24, 2024
1
In vivo assessment of reactive oxygen species production and oxidative stress effects induced by chronic exposure to gamma radiation in Caenorhabditis elegans
www.sciencedirect.com/science/article/pii/S089158491931634X
Apr 24, 2024
1
Automated Analysis of C. elegans Swim Behavior Using CeleST Software (Video) | JoVE
app.jove.com/t/54359/automated-analysis-of-c-elegans-swim-behavior-using-celest-software
Apr 24, 2024
3
α-synuclein oligomers interact with ATP synthase and open the permeability transition pore in Parkinson’s disease - Nature Communications
www.nature.com/articles/s41467-018-04422-2
Apr 24, 2024
1
Neuropeptide signals cell non-autonomous mitochondrial unfolded protein response - Cell Research
www.nature.com/articles/cr2016118
Apr 24, 2024
1
Comparative Studies in the A30P and A53T α-Synuclein C. elegans Strains to Investigate the Molecular Origins of Parkinson's Disease
www.ncbi.nlm.nih.gov/pmc/articles/PMC8019828/
Apr 24, 2024
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