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DLKcat cannot predict meaningful kcat values for mutants and unfamiliar enzymes - PMC

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Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction - s41929-022-00798-z.pdf

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Industrial–scale production of various bio–commodities by engineered microbial cell factories: Strategies of engineering in microbial robustness

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Recent advances in bio-based production of top platform chemical, succinic acid: an alternative to conventional chemistry - Biotechnology for Biofuels and Bioproducts

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Diffusion Meets Flow Matching

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An introduction to Flow Matching · Cambridge MLG Blog

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Synthetic Biology Is Set To Explode, But Only Once This Huge Bottleneck Is Gone

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Improving de novo protein binder design with deep learning - Nature Communications

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Microbial synthesis of vanillin from waste poly(ethylene terephthalate) - Green Chemistry (RSC Publishing) DOI:10.1039/D1GC00931A

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Understanding and Coding the Self-Attention Mechanism of Large Language Models From Scratch

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EnzyACT: A Novel Deep Learning Method to Predict the Impacts of Single and Multiple Mutations on Enzyme Activity

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EnzymeFlow: Generating Reaction-specific Enzyme Catalytic Pockets through Flow Matching and Co-Evolutionary Dynamics

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PILOT: equivariant diffusion for pocket-conditioned de novo ligand generation with multi-objective guidance via importance sampling

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De novo design of allosterically switchable protein assemblies - Nature

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Extracting accurate materials data from research papers with conversational language models and prompt engineering - Nature Communications

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MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization

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Global mapping of GalNAc-T isoform-specificities and O-glycosylation site-occupancy in a tissue-forming human cell line

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Structural basis for peptide substrate specificities of glycosyltransferase GalNAc-T2. - Abstract - Europe PMC

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Exploring Regulation of Protein O-Glycosylation in Isogenic Human HEK293 Cells by Differential O-Glycoproteomics

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LAB-Bench Measuring Capabilities of Language Models for Biology Research

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Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology

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O-glycosylation and its role in therapeutic proteins

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Emerging Paradigms for the Initiation of Mucin-type Protein O-Glycosylation by the Polypeptide GalNAc Transferase Family of Glycosyltransferases

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Emerging paradigms for the initiation of mucin-type protein O-glycosylation by the polypeptide GalNAc transferase family of glycosyltransferases - PubMed

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Travel is changing: will you be an Excited Experientialist or a Travel Tech-fluencer in 2033?

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Adam Enfroy-Thoughts Please? : r/Blogging

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Structural Plasticity of LL-37 Indicates Elaborate Functional Adaptation Mechanisms to Bacterial Target Structures

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Conformational Changes of Anoplin, W-MreB1–9, and (KFF)3K Peptides near the Membranes

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