Whole-Genome Sequencing of Staphylococcus haemolyticus Uncovers the Extreme Plasticity of Its Genome and the Evolution of Human-Colonizing Staphylococcal Species - PMC
pmc.ncbi.nlm.nih.gov/articles/PMC1272970/
Nov 27, 2025
16
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity | PNAS
www.pnas.org/doi/10.1073/pnas.1523199113
Nov 24, 2025
1
Pathogenomics of the staphylococci: insights into niche adaptation and the emergence of new virulent strains
academic.oup.com/femsle/article/289/1/1/584231
Nov 24, 2025
4
Leaky barriers to gene sharing between locally co-existing coagulase-negative Staphylococcus species - Communications Biology
www.nature.com/articles/s42003-023-04877-0
Nov 14, 2025
2
Two-Component Systems of S. aureus: Signaling and Sensing Mechanisms - PMC
pmc.ncbi.nlm.nih.gov/articles/PMC8774646/
Oct 21, 2025
1
Population genomics of Staphylococcus pseudintermedius in companion animals in the United States - Communications Biology
www.nature.com/articles/s42003-020-1009-y
Sep 22, 2025
2
SCARAP: scalable cross-species comparative genomics of prokaryotes
academic.oup.com/bioinformatics/article/41/1/btae735/7921419
Sep 19, 2025
1
Population and pan-genomic analyses of Staphylococcus pseudintermedius identify geographic distinctions in accessory gene content and novel loci associated with AMR | Applied and Environmental Microbiology
journals.asm.org/doi/10.1128/aem.00010-25
Sep 19, 2025
2
A gentle introduction to pangenomics
academic.oup.com/bib/article/25/6/bbae588/7902219
Sep 18, 2025
4
Chromosomal gene order defines several structural classes of Staphylococcus epidermidis genomes
journals.plos.org/plosone/article?id=10.1371/journal.pone.0311520
Sep 16, 2025
1
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis - Nature Communications
www.nature.com/articles/s41467-018-07368-7
Sep 16, 2025
1
ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies - PMC
pmc.ncbi.nlm.nih.gov/articles/PMC8106394/
Aug 21, 2025
1
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
academic.oup.com/bioinformatics/article/21/19/3787/210373
Aug 19, 2025
2
KEGG_Extractor: An Effective Extraction Tool for KEGG Orthologs - PMC
pmc.ncbi.nlm.nih.gov/articles/PMC9956942/
Aug 19, 2025
2
A Single, Specific Thymine Mutation in the ComK-Binding Site Severely Decreases Binding and Transcription Activation by the Competence Transcription Factor ComK of Bacillus subtilis | Journal of Bacteriology
journals.asm.org/doi/10.1128/jb.00281-07
Jul 25, 2025
1
Frontiers | Identification of a Lactate-Quinone Oxidoreductase in Staphylococcus aureus that is Essential for Virulence
www.frontiersin.org/journals/cellular-and-infection-microbiology/articles/10.3389/fcimb.2011.00019/full
Jul 25, 2025
1
Intrinsically unstructured proteins and their functions - Nature Reviews Molecular Cell Biology
www.nature.com/articles/nrm1589
Jul 25, 2025
2
Example-driven guide - LoVis4u
art-egorov.github.io/lovis4u/ExampleDrivenGuide/cmd_guide/
Jul 21, 2025
Strain tracking in complex microbiomes using synteny analysis reveals per-species modes of evolution - Nature Biotechnology
www.nature.com/articles/s41587-024-02276-2
Jul 2, 2025
1
Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome - PMC
pmc.ncbi.nlm.nih.gov/articles/PMC11265343/
Jun 2, 2025
3
Microbial genome analysis: the COG approach
academic.oup.com/bib/article/20/4/1063/4158183
May 8, 2025
1
Pangenome analysis reveals the genetic basis for taxonomic classification of the Lactobacillaceae family
www.sciencedirect.com/science/article/pii/S0740002023001211
May 5, 2025
1
Different evolutionary trends form the twilight zone of the bacterial pan-genome
www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000670
Apr 25, 2025
1
Functional and evolutionary significance of unknown genes from uncultivated taxa - Nature
www.nature.com/articles/s41586-023-06955-z
Apr 25, 2025
4
A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights | Journal of Bacteriology
journals.asm.org/doi/10.1128/jb.01688-14
Mar 24, 2025
10
Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes - PMC
pmc.ncbi.nlm.nih.gov/articles/PMC10963913/
Mar 24, 2025
2
Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations
academic.oup.com/mbe/article/34/5/1167/2983515
Mar 24, 2025
1
Current Methods for Recombination Detection in Bacteria
www.mdpi.com/1422-0067/23/11/6257
Mar 24, 2025
10
Typing methods based on whole genome sequencing data - One Health Outlook
onehealthoutlook.biomedcentral.com/articles/10.1186/s42522-020-0010-1
Mar 21, 2025
2
Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic Klebsiella oxytoca species complex | Journal of Clinical Microbiology
journals.asm.org/doi/10.1128/jcm.01725-23
Mar 21, 2025
1