Ribosomal dormancy at the nexus of ribosome homeostasis and protein synthesis
onlinelibrary.wiley.com/doi/full/10.1002/bies.202300247
Feb 14, 2025
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Revisiting the y-ome of Escherichia coli
academic.oup.com/nar/article/52/20/12201/7814695?login=false
Jan 15, 2025
2
Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics
www.cell.com/cell-reports/fulltext/S2211-1247(23)01531-0
Jan 15, 2025
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pBAM1: an all-synthetic genetic tool for analysis and construction of complex bacterial phenotypes - BMC Microbiology
bmcmicrobiol.biomedcentral.com/articles/10.1186/1471-2180-11-38/tables/3
Jan 14, 2025
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(PDF) Mini Bubble Columns for Miniaturizing Scale‐Down
www.researchgate.net/publication/383649843_Mini_Bubble_Columns_for_Miniaturizing_Scale-Down
Oct 31, 2024
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Methionine | EcoSal Plus
journals.asm.org/doi/full/10.1128/ecosalplus.3.6.1.7
Oct 29, 2024
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The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions | mSystems
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Sep 12, 2024
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Global quantification of mammalian gene expression control - Nature
www.nature.com/articles/nature10098
Sep 5, 2024
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How selection shapes the short- and long-term dynamics of molecular evolution
www.pnas.org/doi/epdf/10.1073/pnas.2311012120
Aug 3, 2024
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Changing fitness effects of mutations through long-term bacterial evolution
www.science.org/doi/epdf/10.1126/science.add1417
Jul 4, 2024
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Meet the Forgotten Woman Who Revolutionized Microbiology With a Simple Kitchen Staple
www.smithsonianmag.com/history/meet-the-forgotten-woman-who-revolutionized-microbiology-with-a-simple-kitchen-staple-180984572/
Jul 4, 2024
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Nonlinear Dependency of Intracellular Fluxes on Growth Rate in Miniaturized Continuous Cultures of Escherichia coli | Applied and Environmental Microbiology
journals.asm.org/doi/10.1128/aem.72.2.1164-1172.2006
Jul 4, 2024
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Bacterial Adaptation through Loss of Function
journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003617
Jul 3, 2024
1
Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli - Nature Communications
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Jun 21, 2024
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Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources
www.cell.com/fulltext/S0092-8674(14)00232-3
Apr 10, 2024
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High-level production of violacein by the newly isolated Duganella violaceinigra str. NI28 and its impact on Staphylococcus aureus - Scientific Reports
www.nature.com/articles/srep15598
Mar 20, 2024
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The cost of gene expression underlies a fitness trade-off in yeast | Proceedings of the National Academy of Sciences
www.pnas.org/doi/abs/10.1073/pnas.0901620106
Mar 13, 2024
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Evolution by gene loss - Nature Reviews Genetics
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Mar 10, 2024
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On the optimality of the enzyme–substrate relationship in bacteria
journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.3001416
Jan 16, 2024
1
Proteome partitioning constraints on long-term laboratory evolution
www.biorxiv.org/content/10.1101/2023.09.08.556843v1
Jan 16, 2024
1
Genome-Wide Determination of Gene Essentiality by Transposon Insertion Sequencing in Yeast Pichia pastoris - Scientific Reports
www.nature.com/articles/s41598-018-28217-z
Jan 11, 2024
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An acetyltranferase moonlights as a regulator of the RNA binding repertoire of the RNA chaperone Hfq in Escherichia coli | Proceedings of the National Academy of Sciences
www.pnas.org/doi/abs/10.1073/pnas.2311509120
Dec 2, 2023
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Growth-rate dependency of ribosome abundance and translation elongation rate in Corynebacterium glutamicum differs from that in Escherichia coli - Nature Communications
www.nature.com/articles/s41467-023-41176-y
Nov 7, 2023
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Engineering Corynebacterium glutamicum for violacein hyper production - Microbial Cell Factories
link.springer.com/article/10.1186/s12934-016-0545-0
Oct 26, 2023
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Revealing the Host-Dependent Nature of an Engineered Genetic Inverter in Concordance with Physiology | BioDesign Research
spj.science.org/doi/10.34133/bdr.0016
Oct 25, 2023
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Deep mutational scanning reveals the molecular determinants of RNA polymerase-mediated adaptation and tradeoffs - Nature Communications
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Oct 13, 2023
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Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655 - PIIS2211124715008190.pdf
www.cell.com/cell-reports/pdf/S2211-1247(15)00819-0.pdf
Sep 18, 2023
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Proteome partitioning constraints on long-term laboratory evolution - 2023.09.08.556843v1.full.pdf
www.biorxiv.org/content/10.1101/2023.09.08.556843v1.full.pdf
Sep 12, 2023
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Multiplexed fitness profiling by RB-TnSeq elucidates pathways for lignin-related aromatic catabolism in Sphingobium sp. SYK-6
www.sciencedirect.com/science/article/pii/S2211124723008586
Aug 2, 2023
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A rapid cell-free expression and screening platform for antibody discovery - Nature Communications
www.nature.com/articles/s41467-023-38965-w
Jul 3, 2023
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A Cell-Free Gene Expression Platform for Discovering and Characterizing Stop Codon Suppressing tRNAs
pubs.acs.org/doi/abs/10.1021/acschembio.3c00051
Jun 3, 2023
1
Ribosome Hibernation Facilitates Tolerance of Stationary-Phase Bacteria to Aminoglycosides | Antimicrobial Agents and Chemotherapy
journals.asm.org/doi/full/10.1128/aac.01532-15
May 29, 2023
2
Ribosome hibernation: a new molecular framework for targeting nonreplicating persisters of mycobacteria
www.ncbi.nlm.nih.gov/pmc/articles/PMC8131030/
May 29, 2023
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Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction
journals.asm.org/doi/epdf/10.1128/jb.177.6.1497-1504.1995?src=getftr
May 29, 2023
2
Hibernating ribosomes exhibit chaperoning activity but can resist unfolded protein-mediated subunit dissociation - PubMed
pubmed.ncbi.nlm.nih.gov/32649051/
May 12, 2023
1
Hacking Trees
www.growbyginkgo.com/2023/04/05/hacking-trees/
May 10, 2023
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Pollution and health: a progress update
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May 4, 2023
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Preventing disease through healthy environments: a global assessment of the burden of disease from environmental risks
www.who.int/publications/i/item/9789241565196
May 4, 2023
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Conservation of Ecosystems and Biodiversity | EBRC Research Roadmap
roadmap.ebrc.org/engineering-biology-for-climate-sustainability/technical-themes/conservation-of-ecosystems-and-biodiversity/
May 4, 2023
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Biosequestration of Greenhouse Gasses | EBRC Research Roadmap
roadmap.ebrc.org/engineering-biology-for-climate-sustainability/technical-themes/biosequestration-of-greenhouse-gasses/
May 4, 2023
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Organism-wide, cell-type-specific secretome mapping of exercise training in mice
www.cell.com/cell-metabolism/fulltext/S1550-4131(23)00138-9
May 3, 2023
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Building a genome-based understanding of bacterial pH preferences
www.science.org/doi/10.1126/sciadv.adf8998
May 2, 2023
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Cobalamin-Dependent Methionine Synthase Is a Modular Protein with Distinct Regions for Binding Homocysteine, Methyltetrahydrofolate, Cobalamin, and Adenosylmethionine†
pubs.acs.org/doi/10.1021/bi9705164
Mar 29, 2023
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Escherichia coli K-12 substr. MG1655 L-methionine biosynthesis I
ecocyc.org/ECOLI/NEW-IMAGE?type=PATHWAY&object=HOMOSER-METSYN-PWY
Mar 29, 2023
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Four families of folate-independent methionine synthases
journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1009342
Mar 28, 2023
3
Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism
journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007066
Mar 27, 2023
2
Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers | Proceedings of the National Academy of Sciences
www.pnas.org/doi/10.1073/pnas.2001562117
Mar 27, 2023
3
Principles of Metabolic Control
onlinelibrary.wiley.com/doi/epdf/10.1002/047167558X.ch1
Mar 16, 2023
12
Vibrio natriegens genome‐scale modeling reveals insights into halophilic adaptations and resource allocation
www.embopress.org/doi/full/10.15252/msb.202110523
Mar 16, 2023
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