Emil Funk Vangsgaard

Emil Funk Vangsgaard

@efv

small things 🦠 big problems 🌍

Copenhagen

Joined Nov 9, 2022

2

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2

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789

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2.41k

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Tweets From LawrenceNg

twitter.com/LawrenceNg119

Jun 7, 2024

11

widdowquinn/pyani: Application and Python module for average nucleotide identity analyses of microbes.

github.com/widdowquinn/pyani

Science
technology
Technology

Jun 7, 2024

1

Introduction to Python for Data Analysis and Automation in Biology

kurser.dtu.dk/course/29905

technology

Jun 6, 2024

1

Benchmarking Kinetic Models of Escherichia Coli Metabolism

www.biorxiv.org/content/biorxiv/early/2020/01/17/2020.01.16.908921.full.pdf

kinetic modelling
master thesis
matlab
systems biology

Jun 4, 2024

4

Home

dce.my.site.com/mydce/s/

May 31, 2024

1

TRYing to Evaluate Production Costs in Microbial Biotechnology

www.cell.com/trends/biotechnology/fulltext/S0167-7799(24)00119-7

techno-economic analysis
idea

May 31, 2024

5

Bayesian Splines Versus Fractional Polynomials in Network Meta-Analysis | BMC Medical Research Methodology | Full Text

bmcmedresmethodol.biomedcentral.com/articles/10.1186/s12874-020-01113-9

May 30, 2024

1

Automated Detection of Bacterial Growth on 96-Well Plates for High-Throughput Drug Susceptibility Testing of Mycobacterium Tuberculosis

www.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.000733#tab2

May 28, 2024

1

Microbial PolyHydroxyAlkanoate (PHA) Biopolymers—Intrinsically Natural

www.ncbi.nlm.nih.gov/pmc/articles/PMC10376151/

recycle

May 28, 2024

3

Techno-Economic Assessment of Producing Bioplastics From Sewage

vb.nweurope.eu/projects/project-search/wow-wider-business-opportunities-for-raw-materials-from-wastewater/news/techno-economic-assessment-of-producing-bioplastics-from-sewage/

May 28, 2024

1

8 ChatGPT Prompts That W...

twitter.com/Damn_coder/status/1794667244762583268

May 27, 2024

11

Matrix Operations

mc-stan.org/docs/functions-reference/matrix_operations.html#gaussian-process-covariance-functions

May 24, 2024

1

A Guide to Conquer the Biological Network Era Using Graph TheoryUpdated

www.frontiersin.org/articles/10.3389/fbioe.2020.00034/full

May 24, 2024

9

Many Academics (Includin...

twitter.com/MushtaqBilalPhD/status/1793279099097460998

May 23, 2024

17

In Situ Quantification of Poly(3-Hydroxybutyrate) and Biomass in Cupriavidus Necator by a Fluorescence Spectroscopic Assay - Applied Microbiology and Biotechnology

link.springer.com/article/10.1007/s00253-021-11670-8?fromPaywallRec=false

May 23, 2024

1

20 Most Valuable Thinking Razors, Mastering the Following Principles of Experience Can Help You Make Better Decisions.

blog.193.gs/20-ge-zui-ju-jia-zhi-de-si-wei-ti-dao--zhang-wo-yi-xia-jing-yan-fa-ze--neng-rang-ni-zuo-chu-geng-hao-de-jue-ce?locale=en

May 23, 2024

1

Production of Polyhydroxyalkanoates From Renewable Resources: A Review on Prospects, Challenges and Applications - Archives of Microbiology

link.springer.com/article/10.1007/s00203-023-03499-8

May 22, 2024

1

Cupriavidus Necator as a Platform for Polyhydroxyalkanoate Production: An Overview of Strains, Metabolism, and Modeling Approaches

www.sciencedirect.com/science/article/pii/S0734975023001714

polyhydroxyalkanoate
cupriavidus
master thesis
favorite

May 21, 2024

31

Incorporating Biological Prior Knowledge for Bayesian Learning via Maximal Knowledge-Driven Information Priors - BMC Bioinformatics

bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1893-4

Bayesian Statistics for Computational Biology

May 16, 2024

3

Engineering Escherichia Coli for Poly-Β-Hydroxybutyrate Production From Methanol - PubMed

pubmed.ncbi.nlm.nih.gov/37106602/

May 13, 2024

1

A High Throughput Nile Red Fluorescence Method for Rapid Quantification of Intracellular Bacterial Polyhydroxyalkanoates

link.springer.com/article/10.1007/s12257-012-0607-z?utm_source=getftr&utm_medium=getftr&utm_campaign=getftr_pilot

May 9, 2024

1

Deep Learning-Based Kcat Prediction Enables Improved Enzyme-Constrained Model Reconstruction

www.nature.com/articles/s41929-022-00798-z?fromPaywallRec=false

molecular discovery
drug discovery

May 8, 2024

3

Organoids Are Not Organs: Sources of Variation and Misinformation in Organoid Biology

www.cell.com/stem-cell-reports/fulltext/S2213-6711(23)00188-1#%20

May 7, 2024

1

Protein Allocation and Utilization in the Versatile Chemolithoautotroph Cupriavidus Necator

elifesciences.org/articles/69019

master thesis

Apr 30, 2024

2

A Genome-Scale Metabolic Model of Cupriavidus Necator H16 Integrated With TraDIS and Transcriptomic Data Reveals Metabolic Insights for Biotechnological Applications

www.ncbi.nlm.nih.gov/pmc/articles/PMC9166356/

master thesis

Apr 30, 2024

3

Home · Rrwick/Trycycler Wiki

github.com/rrwick/Trycycler/wiki

genomics
unicycler
trycycler
genome assembly
sequencing
master thesis

Apr 22, 2024

2

The Energy Metabolism of Cupriavidus Necator in Different Trophic Conditions | bioRxiv

www.biorxiv.org/content/10.1101/2024.02.26.582058v1.full

Apr 10, 2024

1

A Review on Enhancing Cupriavidus Necator Fermentation for Poly(3-Hydroxybutyrate) (PHB) Production From Low-Cost Carbon Sources

www.ncbi.nlm.nih.gov/pmc/articles/PMC9343952/

green

Mar 27, 2024

4

Tailored Polyhydroxyalkanoate Production From Renewable Non-Fatty Acid Carbon Sources Using Engineered Cupriavidus Necator H16

www.sciencedirect.com/science/article/pii/S0141813024011632

master thesis
reading
reading list
green

Mar 27, 2024

3

Tailored Polyhydroxyalkanoate Production From Renewable Non-Fatty Acid Carbon Sources Using Engineered Cupriavidus Necator H16

www.sciencedirect.com/science/article/abs/pii/S0141813024011632

Mar 24, 2024

3

Generating Assemblies · Rrwick/Trycycler Wiki

github.com/rrwick/Trycycler/wiki/Generating-assemblies

genomics

Mar 17, 2024

1

Synthesis of Polyhydroxyalkanoate in the Peroxisome of Saccharomyces Cerevisiae by Using Intermediates of Fatty Acid Β-Oxidation

www.ncbi.nlm.nih.gov/pmc/articles/PMC93298/

master thesis
PhaC
PHA

Mar 15, 2024

1

Core and Auxiliary Functions of One-Carbon Metabolism in Pseudomonas Putida Exposed by a Systems-Level Analysis of Transcriptional and Physiological Responses

journals.asm.org/doi/full/10.1128/msystems.00004-23

Mar 13, 2024

2

Osum - AI Insights | AI Market Research Tools for Growth

osum.com/?ref=taaft&utm_source=taaft&utm_medium=referral

AI tools
ai tools

Mar 12, 2024

1

Rrwick/Unicycler: Hybrid Assembly Pipeline for Bacterial Genomes

github.com/rrwick/Unicycler

Mar 11, 2024

3

Mitigating Plastic Pollution While Regenerating Our Oceans

www.agilent.com/about/mygreenlab/en/feature-regenerating-our-oceans.html

Feb 20, 2024

1

Engineering the Biological Conversion of Formate Into Crotonate in Cupriavidus Necator

www.sciencedirect.com/science/article/pii/S1096717623000976#undfig1

formate
master thesis
market size
biobased chemical production
biobased

Feb 6, 2024

19

A universal metabolite repair enzyme removes a strong inhibitor of the TCA cycle

www.nature.com/articles/s41467-024-45134-0

Feb 5, 2024

1

An “Energy-Auxotroph” Escherichia Coli Provides an in Vivo Platform for Assessing NADH Regeneration Systems

onlinelibrary.wiley.com/doi/full/10.1002/bit.27490

Feb 2, 2024

1

Process modelling for industrial scale polyhydroxybutyrate production using fructose, formic acid and CO2: Assessing carbon sources and economic viability

www.sciencedirect.com/science/article/pii/S0960852423015675?via%3Dihub

Feb 1, 2024

3

Wikiwand - Glucose-6-phosphate dehydrogenase deficiency

www.wikiwand.com/en/Glucose-6-phosphate_dehydrogenase_deficiency

Feb 1, 2024

1

Process Modelling for Industrial Scale Polyhydroxybutyrate Production Using Fructose, Formic Acid and CO2: Assessing Carbon Sources and Economic Viability

www.sciencedirect.com/science/article/pii/S0960852423015675#f0035

techno-economic analysis
mt_introduction
master thesis
phb

Feb 1, 2024

1

Application Showcase

www.gopha.org/application-showcase

master thesis

Feb 1, 2024

1

QS40 True Biotic

www.prodir.com/en/pens/qs40-true-biotic/overview

master thesis
phb
pha

Feb 1, 2024

1

Recent Trends of Biotechnological Production of Polyhydroxyalkanoates From C1 Carbon Sources

www.frontiersin.org/articles/10.3389/fbioe.2022.907500/full

master thesis

Feb 1, 2024

1

Applying Statistical Design of Experiments to Understanding the Effect of Growth Medium Components on Cupriavidus Necator H16 Growth | Applied and Environmental Microbiology

journals.asm.org/doi/10.1128/aem.00705-20

science
paper

Jan 17, 2024

3

Guide to bacterial genome assembly · rrwick/Trycycler Wiki

github.com/rrwick/Trycycler/wiki/Guide-to-bacterial-genome-assembly#appendix-what-sequencing-should-i-do

Science
master thesis
genomics

Jan 12, 2024

1

Calibrating Your Plate Reader for Microbial Growth Measurements

bellinghamresearch.com/calibrating-your-plate-reader-for-microbial-growth-measurements/

Jan 12, 2024

1

Metabolic engineering of Cupriavidus necator H16 for heterotrophic and autotrophic production of 3-hydroxypropionic acid

www.sciencedirect.com/science/article/pii/S1096717622001331

Jan 10, 2024

1

Integrated Electromicrobial Conversion of CO2 to Higher Alcohols

www.science.org/doi/epdf/10.1126/science.1217643?src=getftr

Jan 8, 2024

1

HST - Hypertrophy specific training

www.bodybuilding.dk/artikler/traeningsprogrammer/traeningsprogrammer/hst---hypertrophy-specific-training.html

Dec 19, 2023

3